Currently, we have participated in or finished Brassica rapa genome, Brassica oleracea genome, Brassica napus genome, Sesamum indicum genome and Arachis hypogaea genome sequencing project. Based on whole genome data of sequenced genome, we focused on oil crops functional genomics and comparative genomics analysis,  as well as developed novel bioinformatics algorithems, web services and expert databases.

Database and Web Services:

• Sesamum indicum Genomics Database (Sinbasse)
• Sesame haplotype map database (SesameHapMap)
• Sesame SNP Database (Sesame snpbase)

1. B. oleracea genome paper was published on Nature Communication !

2. Sesamum indicum Genomics Database (Sinbasse) was online !

3. Sesamum indicum Genome paper was published in Genome Biology !

4. Plant Tandem Duplicated Genes Database (PTGBase) was online !

5. Oil Crops Comparative Analysis Database of seed ESTs (ocsESTdb) was online !

6. Brassica oleracea Genomics Database (Bolbasse) was online !

Plant genomes that was released (Until to 01/s02/2013)

Species name Date Journal Genome Size Ploidy, Chromosomes Arabidopsis thaliana  2000.12 Nature  125M 2n=10 Oryza sativaL. ssp.indica 2002.04 Science  466M 2n=24 Oryza sativa L. ssp.japonica 2002.04 Science  466M 2n=24 Populus trichocarpa 2006.09 Science  480M 2n=38 Vitis vinifera 2007.09 Nature  490M 2n=38 Chlamydomonas reinhardtii 2007.01 Science 130 M 　 Physcomitrella pattens 2008.01 Science  480M 　 Carica papaya 2008.04 Nature  370M 2n=18 Phaeodactylum tricornutum 2008.11 Nature 27.4M 　 Sorghum bicolor 2009.01 Nature  730M 2n=20 Zea mays ssp. mays L. 2009.11 Science  2300M 2n=20 Cucumis sativus L. 2009.11 Nature Genetics  350M 2n=14 Glycine max 2010.01 Nature  1100M 2n=40 Brachypodium distachyon 2010.02 Nature  260M 2n=10 Ectocarpus 2010.06 Nature  196M 36 .. .. .. ..

 

• NCBI
• EMBL-EBI
• DDBJ
• KEGG
• JGI
• Phytozome
• InterproScan
• TAIR
• CPAN
• MySQL