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Summary of microsatellite DNAs
 ♣ Statistics of microsatellite DNAs in plants
 
Species Total sequences Genome size (bp): Total entries of SSRs  Genomic regions of SSRs (bp)  Percentage % (Total SSRs/Genome size)
Actinidia chinensis 30 631450069 299693 7037000 1.114
Aegilops tauschii 235347 5329304091 600609 15038637 0.282
Amborella trichopoda 5745 706332648 331113 8852537 1.253
Ananas comosus 3128 381896302 249895 7948983 2.081
Arabidopsis lyrata 695 206667935 91185 1987045 0.961
Arabidopsis thaliana 5 119146348 45552 881467 0.74
Arachis duranensis 1507 1084261490 219885 4284177 0.395
Arachis ipaensis 552 1353826449 317345 6417597 0.474
Aureococcus anophagefferens 1185 56660578 16181 353666 0.624
Beta vulgaris 40508 566571340 192668 4735149 0.836
Betula nana 551923 564011865 428888 11510769 2.041
Bigelowiella natans 302 94701163 115507 6147306 6.491
Boea hygrometrica 401752 1521360707 144490 2738396 0.18
Brachypodium distachyon 83 271923306 48549 830372 0.305
Brassica napus 41 850292103 326319 7025546 0.826
Brassica oleracea 9 385006588 155405 3111720 0.808
Brassica rapa 40367 283841084 131271 2689594 0.948
Cajanus cajan 137542 605780537 266601 6180521 1.02
Cannabis sativa 224195 221412515 106422 2028975 0.916
Capsicum annuum var.glabriusculum 13 3586841310 429465 9256188 0.258
Capsicum annuum var.Zunla-1 13 3363962270 593391 13318203 0.396
Carica papaya 3207 331271729 126924 3351909 1.012
Chlamydomonas reinhardtii 88 112305447 55764 2238044 1.993
Chlorella variabilis 414 46159515 17803 484460 1.05
Cicer arietinum 38513 510879539 180154 5936111 1.162
Citrullus lanatus 12 355247419 210556 5687342 1.601
Citrus clementina 1398 301386998 149778 3334704 1.106
Citrus sinensis 10 327944670 157877 3935829 1.2
Coffea canephora 12 569911005 202028 4693805 0.824
Cucumis melo 13 406928820 181079 4452095 1.094
Cucumis sativus 47488 243568484 103326 2036178 0.836
Cyanophora paradoxa 60119 70202019 22142 438274 0.624
Dendrobium catenatum 72901 1008531891 351679 7895849 0.783
Dendrobium officinale 751466 1446999500 482200 11395645 0.788
Dianthus caryophyllus 45088 568887315 231856 6275089 1.103
Ectocarpus siliculosus 1561 195781519 113425 3338260 1.705
Elaeis guineensis 40061 1535178229 308787 6835874 0.445
Emiliania huxleyi 7809 167727055 68702 2680742 1.598
Eucalyptus grandis 4951 691429809 296350 7058366 1.021
Fragaria ananassa 211588 173229572 52204 980078 0.566
Fragaria vesca 8 211673467 73283 1719145 0.812
Glycine max 1169 1036554250 382236 8871496 0.856
Glycine soja 33170 863568428 319474 6751108 0.782
Gossypium arboretum 75594 1694649772 351276 6915437 0.408
Gossypium hirsutum 9154 2150929310 361668 6467061 0.301
Gossypium raimondii 4447 775180285 188999 3634086 0.469
Guillardia theta 670 87159915 36062 1892421 2.171
Hevea brasiliensis 1150326 1301404408 386293 7828685 0.602
Hordeum vulgare 19705 4045300851 186477 3518180 0.087
Humulus lupulus var.cordifolius 132476 2049208583 479310 10113847 0.494
Humulus lupulus var.lupulus 132476 2049208583 481288 10171185 0.496
Jatropha curcas 150417 286159324 155919 3811024 1.332
Linum usitatissimum 88420 318250901 47981 987995 0.31
Lotus japonicus 7 301341829 65232 1346719 0.447
Malus domestica 19892 1071142431 180998 4373982 0.408
Medicago truncatula 157 307481907 133025 3012280 0.98
Morus notabilis 31301 320378613 242118 6987343 2.181
Musa acuminata 24 450848473 118834 3494738 0.775
Nelumbo nucifera 3603 804647751 292455 6261365 0.778
Nicotiana tabacum var.Basma 420216 3758148345 529174 11529808 0.307
Nicotiana tabacum var.K326 382373 3752655195 550860 12378511 0.33
Nicotiana tabacum var.TN90 249104 3729080544 563013 12476997 0.335
Oropetium thomaeum 625 243174629 79256 1639919 0.674
Oryza brachyantha 7485 260838168 72589 1607857 0.616
Oryza glaberrima 1951 316419574 98003 2013860 0.636
Oryza sativa L.ssp.indica 10491 427026737 124340 2738682 0.641
Oryza sativa L.ssp.japonica 12 373245519 118039 2713667 0.727
Phaeodactylum tricornutum 33 26138756 1373 36544 0.14
Phalaenopsis equestris 236185 1086208791 334973 7645662 0.704
Phaseolus vulgaris 708 521076998 139362 2720581 0.522
Phoenix dactylifera 57277 381563256 149643 3359702 0.881
Phyllostachys heterocycla 277278 2051719643 267531 5758673 0.281
Physcomitrella patens 2106 479985347 162865 4708659 0.981
Picea abies 10253694 12301351591 1857782 42702178 0.347
Pinus taeda 14412986 23180477227 2652093 54207874 0.234
Populus euphratica 9674 496523845 280774 7267129 1.464
Populus trichocarpa 2518 417137944 241319 5435389 1.303
Primula veris 8756 309692940 123574 2928356 0.946
Prunus mume 8 198660266 88378 2156850 1.086
Prunus persica 191 227411381 97863 2428002 1.068
Pyrus bretschneideri 1351 508971572 209095 6175895 1.213
Ricinus communis 25828 350631014 107429 2396703 0.684
Saccharina japonica 13327 543425876 377092 13819605 2.543
Salix suchowensis 103194 303772403 168796 3945360 1.299
Selaginella moellendorffii 768 212761159 34819 842667 0.396
Sesamum indicum 4449 272734981 109528 2866923 1.051
Setaria italica 9 463033814 57140 1304867 0.282
Solanum lycopersicum 13 781666411 146602 3951813 0.506
Solanum melongena 33873 833108130 169107 3993492 0.479
Solanum pennellii 13 989528177 195830 5991218 0.605
Solanum tuberosum 12 725017384 160272 3551554 0.49
Sorghum bicolor 3304 738540932 116355 2673686 0.362
Spirodela polyrhiza 16051 132009443 68405 2121077 1.607
Symbiodinium minutum 21899 609476485 201125 8338653 1.368
Tarenaya hassleriana 12249 249929577 126328 3632013 1.453
Thellungiella parvula 2136 123600562 37461 684412 0.554
Thellungiella salsuginea 638 243110105 98033 1976125 0.813
Theobroma cacao 11 327353121 108586 2076286 0.634
Trifolium pratense 39051 345990850 164576 3368378 0.974
Triticum aestivum 317977 6483288884 624900 12705261 0.196
Triticum urartu 499222 3747163292 316815 6384987 0.17
Utricularia gibba 5060 81875486 22081 370011 0.452
Vigna angularis 37373 466744453 130521 2686003 0.575
Vigna radiata 2499 463637892 174190 4565036 0.985
Vitis vinifera 33 486198630 246546 6405029 1.317
Volvox carteri 434 131163211 62090 2236444 1.705
Zea mays 11 2065722704 180183 3668218 0.178
Zizania latifolia 4522 603989347 52067 1228183 0.203
Ziziphus jujuba 4789 437753511 371810 12716224 2.905
Zostera marina 2228 203913826 37361 620383 0.304

 

 
Statistic information of different SSR motifs in plants
 
Species Mono Di Tri Tetra Penta Hexa Total SSR entries
Actinidia chinensis 186044 134499 18963 6656 1961 2617 299693
Aegilops_tauschii 277712 252787 148298 9809 1131 892 600609
Amborella trichopoda 213612 159320 24632 4347 1245 1793 331113
Ananas_comosus 159815 130069 29925 4817 1164 1333 249895
Arabidopsis lyrata 78001 17390 7294 255 75 91 91185
Arabidopsis thaliana 34751 9375 5593 169 41 57 45552
Arachis duranensis 144287 47805 42529 4988 1657 744 219885
Arachis ipaensis 223670 75334 45717 6736 2419 850 317345
Aureococcus_anophagefferens 1513 7385 9156 82 6 119 16181
Beta vulgaris 153590 40707 25149 1378 4687 1275 192668
Betula nana 424507 84006 24114 4288 1075 543 428888
Bigelowiella_natans 23835 74656 76980 2304 132 587 115507
Boea_hygrometrica 66401 38941 52218 571 144 199 144490
Brachypodium distachyon 30643 9421 10647 990 196 84 48549
Brassica napus 250678 86974 22079 1841 473 484 326319
Brassica oleracea 122211 40929 9763 798 273 225 155405
Brassica rapa 100591 33887 10051 962 190 161 131271
Cajanus cajan 172450 104192 26990 3929 700 791 266601
Cannabis_sativa 80494 22619 13053 1415 224 148 106422
Capsicum_annuum_var.glabriusculum 229301 97694 47180 4807 889 888 429465
Capsicum_annuum_var.Zunla-1 377376 198033 98173 13090 1674 2159 593391
Carica papaya 80574 59024 11710 1995 847 304 126924
Chlamydomonas reinhardtii 14096 25488 29376 2876 1048 1700 55764
Chlorella variabilis 2095 4106 12055 1964 429 128 17803
Cicer arietinum 125329 44617 29857 4087 714 590 180154
Citrullus lanatus 187528 37951 23366 5465 1163 589 210556
Citrus sinensis 130762 29847 18244 2769 516 266 157877
Citrus_clementina 123501 29041 17773 2688 493 204 149778
Coffea canephora 172838 46468 11734 2516 538 310 202028
Cucumis melo 136246 44556 24862 3989 1518 520 181079
Cucumis sativus 73678 28399 11044 1289 269 114 103326
Cyanophora paradoxa 8437 4716 7320 952 1853 340 22142
Dendrobium_catenatum 273213 104070 29970 2128 356 159 351679
Dendrobium_officinale 369517 158257 46077 3206 671 304 482200
Dianthus_caryophyllus 215388 18113 34218 3949 6464 1279 231856
Ectocarpus_siliculosus 81948 20163 35556 2611 569 869 113425
Elaeis_guineensis 221247 105267 24427 7247 1789 560 308787
Emiliania_huxleyi 28311 25197 29312 4412 783 3425 68702
Eucalyptus_grandis 223436 81140 28686 5595 1564 808 296350
Fragaria vesca 46148 29090 7772 731 213 171 73283
Fragaria_ananassa 32623 17576 6244 469 137 159 52204
Glycine max 276404 105796 40810 4202 1239 297 382236
Glycine_soja 232470 85703 33744 3582 477 238 319474
Gossypium raimondii 141356 41455 18091 3939 1585 858 188999
Gossypium_arboretum 263098 89971 28085 4313 2115 1246 351276
Gossypium_hirsutum 253514 86241 38279 8450 3376 1817 361668
Guillardia_theta 4363 2326 31301 3820 4154 6193 36062
Hevea_brasiliensis 265099 103776 48099 6209 3904 614 386293
Hordeum_vulgare 93771 72530 35400 4403 664 316 186477
Humulus_lupulus_var.cordifolius 296884 181968 60288 3820 845 1292 479310
Humulus_lupulus_var.lupulus 298162 182973 60057 3844 857 1319 481288
Jatropha curcas 134574 29901 14365 2560 498 240 155919
Linum usitatissimum 21776 11214 16779 1292 233 126 47981
Lotus japonicus 49447 13858 8833 799 245 348 65232
Malus domestica 128947 67568 14960 2227 530 220 180998
Medicago truncatula 120383 20999 9647 1079 216 137 133025
Morus_notabilis 206167 72898 20072 3515 940 366 242118
Musa acuminata 58523 65494 20064 2366 417 391 118834
Nelumbo_nucifera 193282 97383 32894 5536 1076 576 292455
Nicotiana_tabacum_var.Basma 336050 154345 94110 6745 1613 1501 529174
Nicotiana_tabacum_var.K326 345113 169533 96027 6860 1655 1630 550860
Nicotiana_tabacum_var.TN90 356006 174965 96249 6897 1626 1588 563013
Oropetium_thomaeum 55801 18321 12893 1393 402 99 79256
Oryza sativa L.ssp.indica 70130 37841 29709 2593 548 357 124340
Oryza sativa L.ssp.japonica 64831 37370 29860 2572 606 262 118039
Oryza_brachyantha 41665 23894 13586 1541 302 126 72589
Oryza_glaberrima 55925 26666 24335 2034 392 203 98003
Phaeodactylum tricornutum 343 538 434 0 94 45 1373
Phalaenopsis_equestris 200699 145901 32251 6654 1276 758 334973
Phaseolus_vulgaris 95853 39160 16701 1354 258 237 139362
Phoenix dactylifera 108096 48156 11841 3329 474 179 149643
Phyllostachys heterocycla 151899 112350 29682 5878 1261 1545 267531
Physcomitrella patens 84954 82907 15554 9365 1991 181 162865
Picea_abies 1117582 714393 228466 26767 8943 4191 1857782
Pinus_taeda 1616865 879636 389361 52229 18348 8926 2652093
Populus trichocarpa 194557 54304 25130 3178 772 665 241319
Populus_euphratica 208481 65061 67689 5808 831 966 280774
Primula_veris 101622 41035 5048 1257 396 541 123574
Prunus mume 56807 36259 7654 1477 317 207 88378
Prunus persica 62530 40280 8093 1575 413 256 97863
Pyrus bretschneideri 176607 63986 11835 3317 603 251 209095
Ricinus communis 69506 33839 14645 2215 432 258 107429
Saccharina_japonica 315070 41641 112066 23877 12188 3604 377092
Salix_suchowensis 105191 57393 26406 4290 875 813 168796
Selaginella moellendorffii 18219 10092 8282 842 94 2219 34819
Sesamum indicum 67949 59886 9116 933 148 162 109528
Setaria italica 36499 12414 11902 1272 267 124 57140
Solanum lycopersicum 86922 62485 30948 3272 300 441 146602
Solanum tuberosum 115589 39856 22406 1645 450 531 160272
Solanum_melongena 105213 56072 30615 2351 689 684 169107
Solanum_pennellii 131508 74203 53319 3918 373 907 195830
Sorghum bicolor 55906 38138 28480 5368 946 726 116355
Spirodela_polyrhiza 18184 53960 9243 1703 133 164 68405
Symbiodinium_minutum 68868 105010 85522 19854 2433 7709 201125
Tarenaya_hassleriana 71854 67255 12541 2651 194 364 126328
Thellungiella parvula 22070 13057 5301 191 73 85 37461
Thellungiella_salsuginea 78716 23654 7403 307 65 89 98033
Theobroma cacao 77312 31044 9010 1238 297 78 108586
Trifolium_pratense 138088 25618 16734 3100 454 211 164576
Triticum aestivum 235273 301936 144906 12486 1487 1412 624900
Triticum urartu 126341 154265 67624 6356 647 750 316815
Utricularia gibba 16685 2933 3320 382 125 82 22081
Vigna_angularis 86204 42703 16534 1212 734 247 130521
Vigna_radiata 127719 51750 17873 1827 912 177 174190
Vitis vinifera 208821 54162 26472 6435 1129 433 162702
Volvox carteri 9198 21177 34642 10016 1582 1678 62090
Zea mays 85853 65190 42822 3316 1064 616 180183
Zizania_latifolia 15726 21350 13415 1759 410 5730 52067
Ziziphus_jujuba 310012 137248 41786 7819 1022 640 371810
Zostera_marina 25882 6791 5011 1542 299 268 37361

 

 
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